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I have a few friends from both VIT and Thapar. I will suggest you opt for Thapar University as it is one of the best colleges in this league.

Admission:

VIT and Thapar University both conduct an entrance examination for the selection of their candidates. However, VIT does not reveal the scores obtained by the candidates. At Thapar, admission is done on the basis of JEE Main marks. Moreover, both the admission and counseling procedure are translucent and there is no Management Quota. At VIT one can get admission on the basis of the category system whereas, at Thapar, the quality (merit-based) is given more preference.

Batch Size:

The number of students at Thapar University per branch is less in comparison to VIT where there is a crowd on a huge level.

FCCS System:

At Thapar FCCS system is present. It is a system that allows the students to choose the timings of their own classes and the respective teachers for those classes.

Although the facilities provided to the students at the VIT campus are exceptional you should not risk your academic career for mere facilities.

You should rather prioritize Thapar and try for a branch of your choice. If you do not get into it then opting for VIT would be better. But keep VIT as your second option.

VIT and BITS both are excellent engineering schools in our country. Both of them are known for their academics and placements in the CSE department. A friend of mine has experienced all three institutes. During his time of admission, he was studying in VIT in the CSE department and then changed to BITS Goa.

• It is considered as the brightest students of VIT is equal to an average student of CSE in BITS Goa. 
• The reason for this is mainly the programs and events being held at the institution continuously and frequently. 
• BITS Goa has amazing faculties too which is an added bonus. 
• Almost every student in BITS Goa is involved in Google Summer of Code (GSOC) or related to Competitive Coding. 
• This enables and pushes the student towards better personality build and development. 

When compared to the NIT’s it all comes down to the NIT you’re comparing to. Older NIT’s like NIT Trichy have high scores even amongst premium education institutes for not just CSE branches but in every other major branch.

One of my friends is in BIT Sindri, so I might be able to answer your question here. Both are very popular institutes, but I will give some information about BIT Sindri’s pros and cons. Analyzing that you can then make an informed decision. 

Why BIT Sindri would be a better choice:

• Not at all expensive, fees are almost negligible here.
• BIT Sindri has been a brand in itself since 1949.
• Has a rich alumni base with great success history.
• Want to crack GATE, CAT, IES, UPSC, JPSC, GRE, TOEFL, SSC, BANK/PO in your current graduation year. You will have ample time to study for those exams while you are in college.
• Attending college is not compulsory.
• Vast campus with beautiful infrastructure(450 acres).

Why you should not choose BIT Sindri :

• Very less number of classes (Even HOD's and professors of college don't recommend taking jobs here because of fewer classes)
• Labs are just for writing assignments and journals.
• Infrastructure is good from many private colleges, but not sufficient professors and lab technicians to help you, and those who are present are not enthusiastic enough to make you learn something new.
• Even there is no Wi-Fi. You will have to go to labs to avail that. You can't even learn by yourself from courses or NPTEL or any other online sites.

That's all about BIT Sindri. Honestly speaking, Personality development and industry exposure are much better at VIT.